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Bogas tutorial
Learn how to access pre-processed data from iTAG and how to access and use tools that allow correction of gene predictions (http://bioinformatics.psb.ugent.be/).
The iTAG annotation for Tomato, integrates protein homology, homology to other dicot genomes, EST and cDNAs, RNAseq reads from all 3 available technologies, ab initio methods from GeneID, Augustus and TwinScan and MS/MS data. This is the first time gene prediction has been done with such a diversity of data. iTAG aims at providing the best possible genome annotation. Still, errors can occur. For this purpose we provide the BOGAS interface that offers preprocessed data, and access to tools to allow experts to correct the predictions.
Instruction movie
The Bogas instruction movie can be viewed here.Tutorial
Contact
Last update: RF/May 2011
Post-doctoral position on the impact of plant domestication on the evolution of plant-associated organisms.