Transcriptomics and expression data and databasesAller au niveau supérieur
Microarray and other expression data such as RT-PCR or EST-derived information
- The EU-SOL microarray database based on BASE will be available from January 2008 to project members.
- Expression data in 11 tissues on a set of transcription factors derived by RT PCR
- This database has been designed to manage and to explore the huge amount of EST reads from 14 Solanaceae and 2 Rubiaceae species. The SOLEST database is constructed by first clustering (EST reads are searched pairwise against each other and grouped into clusters based on shared sequence similarity), then assembling EST reads to produce tentative consensus sequences (TCs) and singletons (sESTs). The total number of unique transcripts found are annotated and classified according to their biological functions.
- Tomato Expression Database is part of the Tomato Genome Project funded by the National Science Foundation (NSF). It includes the tomato microarray data warehouse, tomato microarray expression data and tomato digital expression data.